Multi electrode analysis


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Documentation for package ‘sjemea’ version 0.36

Help Pages

aps.read.spikes Read in the .mat file containing MEA data from Alan Litke
compute.ns Compute network spikes
count.nab Histogram routines to help compute the cross-correlation between a pair of spike trains.
feller.read.spikes Read in a directory of spike times from Marla Feller and create a "spikes" data structure.
hist.ab Histogram routines to help compute the cross-correlation between a pair of spike trains.
histbi.ab Histogram routines to help compute the cross-correlation between a pair of spike trains.
iit.read.spikes Read in the .mat file containing MEA data from Alan Litke
jay.read.spikes Read in the .txt file from Neuroexplorer and create a "spikes" data structure.
litke.read.spikes Read in the .mat file containing MEA data from Alan Litke
litke1layout Layout of the MEA provided by Alan Litke, as used in the 2009 Neuron paper.
read.spikes Read in the .txt file from Neuroexplorer and create a "spikes" data structure.
sanger.read.spikes Read in a nexTimestamps file from Neuroexplorer and create a "spikes" data structure.
show.ns Compute network spikes
spikes.to.bursts Burst detection of MEA spike trains.
spikes.to.bursts.surprise Burst detection of MEA spike trains.
test.count.hist.nab Histogram routines to help compute the cross-correlation between a pair of spike trains.
test.count.hist2.nab Histogram routines to help compute the cross-correlation between a pair of spike trains.
test.hist.ab Histogram routines to help compute the cross-correlation between a pair of spike trains.
test.histograms.versus.r Histogram routines to help compute the cross-correlation between a pair of spike trains.